Package: abyss Description-md5: 7c736de2ab206e6ade42c9f95ff44b4a Description-en: de novo, parallel, sequence assembler for short reads ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread. Package: anbox Description-md5: 2cf24869b7c28429da5987f75987875f Description-en: Android in a box Anbox is a container-based approach to boot a full Android system on a regular GNU/Linux system. . In other words: Anbox will let you run Android on your Linux system without the slowness of virtualization. . Anbox uses Linux namespaces (user, pid, uts, net, mount, ipc) to run a full Android system in a container and provide Android applications on any GNU/Linux-based platform. . The Android inside the container has no direct access to any hardware. All hardware access is going through the anbox daemon on the host. It reuses what Android implemented within the QEMU-based emulator for OpenGL ES accelerated rendering. The Android system inside the container uses different pipes to communicate with the host system and sends all hardware access commands through these. . This package needs Android kernel modules and rootfs image, see /usr/share/doc/anbox/README.Debian for information. Package: python3-okasha Description-md5: ed6edbf3deb3983057d29b8c36a36a70 Description-en: trivial WSGI web framework for Python Almost do-nothing web framework that features: * WSGI-enabled ie. can be used with mod_wsgi, mod_python, Fast CGI, CGI, with paste or even without even a server * light weight * can be tuned to be suitable for desktop apps or public web servers * no extra dependencies * very simple * Contains a module to add support for XSLT-based templates (requires python-lxml package) * Contains a module to add support for Kid-based templates (requires python-kid package) * Contains a module to add support for Bottle-based templates Package: python3-okasha-examples Description-md5: 5b25d92da2de19f5812b5a45b992d1e8 Description-en: trivial WSGI web framework for Python (examples) Almost do-nothing web framework that features: * WSGI-enabled ie. can be used with mod_wsgi, mod_python, fast cgi, cgi, with paste or even without even a server * light weight * can be tuned to be suitable for desktop apps or public web servers * no extra dependencies * very simple . This package contains an example application using Okasha web framework. Package: r-cran-surveillance Description-md5: 3206ab392e2d1549a03174efb7d99d18 Description-en: GNU R package for the Modeling and Monitoring of Epidemic Phenomena Implementation of statistical methods for the modeling and change-point detection in time series of counts, proportions and categorical data, as well as for the modeling of continuous-time epidemic phenomena, e.g., discrete-space setups such as the spatially enriched Susceptible-Exposed-Infectious-Recovered (SEIR) models, or continuous-space point process data such as the occurrence of infectious diseases. Main focus is on outbreak detection in count data time series originating from public health surveillance of communicable diseases, but applications could just as well originate from environmetrics, reliability engineering, econometrics or social sciences. . Currently, the package contains implementations of many typical outbreak detection procedures such as Farrington et al (1996), Noufaily et al (2012) or the negative binomial LR-CUSUM method described in Höhle and Paul (2008). A novel CUSUM approach combining logistic and multinomial logistic modelling is also included. Furthermore, inference methods for the retrospective infectious disease models in Held et al (2005), Held et al (2006), Paul et al (2008), Paul and Held (2011), Held and Paul (2012), and Meyer and Held (2014) are provided. . Continuous self-exciting spatio-temporal point processes are modeled through additive-multiplicative conditional intensities as described in Höhle (2009) ('twinSIR', discrete space) and Meyer et al (2012) ('twinstim', continuous space). . The package contains several real-world data sets, the ability to simulate outbreak data, visualize the results of the monitoring in temporal, spatial or spatio-temporal fashion. . Note: Using the 'boda' algorithm requires the 'INLA' package, which is available from . Package: raspi3-firmware Description-md5: bfe8ebc058cce6653c20fea6f85a4246 Description-en: transitional package This is a transitional package. It can safely be removed. Package: snaphu Description-md5: 6ac13ac4c3384f0d55c3268461aa73d3 Description-en: Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping Two-dimensional phase unwrapping is the process of recovering unambiguous phase data from a 2-D array of phase values known only modulo 2pi rad. . There are many applications, like Magnetic Resonance Imaging (MRI), Synthetic Aperture Radar (SAR), fringe pattern analysis, tomography and spectroscopy, which as part of their fundamental operation depend upon the extraction of a phase signal from their input image. Usually the phase is available in a form that suffers from 2-pi phase jumps due to the use of the mathematical arctangent function, which produces an inherently wrapped output. This wrapped phase is unusable until the phase discontinuities are removed. . SNAPHU is an implementation of the Statistical-cost, Network-flow Algorithm for Phase Unwrapping particularly suitable for SAR interferometry applications. This algorithm poses phase unwrapping as a maximum a posteriori probability (MAP) estimation problem, the objective of which is to compute the most likely unwrapped solution given the observable input data. Because the statistics relating the input data to the solution depend on the measured quantity, SNAPHU incorporates three built-in statistical models, for topography data, deformation data, and smooth generic data. The posed optimization problem is solved approximately with use of network-flow techniques. . As SNAPHU uses an iterative optimization procedure, its execution time depends on the difficulty of the interferogram. In single-tile mode the required memory is on the order of 100 MB per 1,000,000 pixels in the input interferogram. Package: xml2rfc Description-md5: 4686bf6f62893f3ed7d4429bc50aa594 Description-en: XML-based formatting tool for RFCs This package provides xml2rfc, a tool which creates text, HTML and nroff output in the format required for Internet-Drafts and RFCs. The text and nroff output is suitable for input to the RFC editor. . The DTD used by the XML documents is described in RFC 2629. Package: raspi-firmware Description-md5: 96c669d5456bd32f391c1ba05ea40ad7 Description-en: Raspberry Pi family GPU firmware and bootloaders This package contains all the proprietary files necessary to boot a Raspberry Pi board. This should work with all models in the 0, 1, 2 and 3 families. . Raspberry Pi is a trademark of the Raspberry Pi Foundation.